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Showing 1 - 50 of 92 items for (author: nagata & k)

EMDB-38291:
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Method: single particle / : Sakuragi TS, Kanai RK, Kikkawa MK, Toyoshima CT, Nagata SN

PDB-8xej:
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Method: single particle / : Sakuragi TS, Kanai RK, Kikkawa MK, Toyoshima CT, Nagata SN

EMDB-34871:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Method: single particle / : Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K

PDB-8hlb:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Method: single particle / : Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K

EMDB-34530:
Membrane protein A
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-34531:
Membrane protein B
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-35713:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

PDB-8dtk:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-35625:
SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Anraku Y, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-35143:
Cryo-EM structure of the zeaxanthin-bound kin4B8
Method: single particle / : Murakoshi S, Chazan A, Shihoya W, Beja O, Nureki O

PDB-8i2z:
Cryo-EM structure of the zeaxanthin-bound kin4B8
Method: single particle / : Murakoshi S, Chazan A, Shihoya W, Beja O, Nureki O

EMDB-34221:
SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1)
Method: single particle / : Anraku Y, Tabata-Sasaki K, Kita S, Fukuhara H, Maenaka K, Hashiguchi T

EMDB-34222:
SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 2)
Method: single particle / : Anraku Y, Tabata-Sasaki K, Kita S, Fukuhara H, Maenaka K, Hashiguchi T

EMDB-34223:
SARS-CoV-2 BA.2.75 spike glycoprotein (1-up state)
Method: single particle / : Anraku Y, Tabata-Sasaki K, Kita S, Fukuhara H, Maenaka K, Hashiguchi T

EMDB-34224:
SARS-CoV-2 BA.2.75 spike glycoprotein in complex with ACE2
Method: single particle / : Anraku Y, Tabata-Sasaki K, Kita S, Fukuhara H, Maenaka K, Hashiguchi T

PDB-8gs6:
Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1)
Method: single particle / : Anraku Y, Tabata-Sasaki K, Kita S, Fukuhara H, Maenaka K, Hashiguchi T

EMDB-32078:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32079:
Cryo-EM structure of the SARS-CoV-2 spike protein (3-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32080:
Cryo-EM structure of the SARS-CoV-2 spike protein (1-up RBD) bound to neutralizing nanobodies P17
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32081:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P17
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

PDB-7vq0:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-13485:
Cryo-EM structure of Bestrhodopsin (rhodopsin-rhodopsin-bestrophin) complex
Method: single particle / : Matzov D, Kaczmarczyk I, Shalev-Benami M

PDB-7pl9:
Cryo-EM structure of Bestrhodopsin (rhodopsin-rhodopsin-bestrophin) complex
Method: single particle / : Matzov D, Kaczmarczyk I, Shalev-Benami M

EMDB-32377:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE

EMDB-32378:
2.12 angstrom cryo-EM map of the pump-like channelrhodopsin ChRmine with Fab antibody fragment
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE

PDB-7w9w:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE

EMDB-30636:
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Method: single particle / : Sakuragi T, Kanai R

PDB-7dce:
Cryo-EM structure of human XKR8-basigin complex bound to Fab fragment
Method: single particle / : Sakuragi T, Kanai R, Tsutsumi A, Narita H, Onishi E, Miyazaki T, Baba T, Nakagawa A, Kikkawa M, Toyoshima C, Nagata S

EMDB-30937:
PolD-primase
Method: single particle / : Oki K, Mayanagi K, Ishino Y

EMDB-23400:
SARS-CoV-2 Spike Protein Trimer bound to DH1043 fab
Method: single particle / : Gobeil S, Acharya P

PDB-7ljr:
SARS-CoV-2 Spike Protein Trimer bound to DH1043 fab
Method: single particle / : Gobeil S, Acharya P

EMDB-23246:
CryoEM map of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1041
Method: single particle / : Manne K, Acharya P

PDB-7laa:
Structure of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1041
Method: single particle / : Manne K, Acharya P

EMDB-23248:
CryoEM map of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1052
Method: single particle / : Manne K, Acharya P

PDB-7lab:
Structure of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1052
Method: single particle / : Manne K, Acharya P

EMDB-23277:
CryoEM map of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1050.1
Method: single particle / : Manne K, Acharya P

EMDB-23279:
CryoEM map of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1047
Method: single particle / : Manne K, Acharya P

PDB-7lcn:
Structure of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1050.1
Method: single particle / : Manne K, Acharya P

PDB-7ld1:
Structure of SARS-CoV-2 S protein in complex with Receptor Binding Domain antibody DH1047
Method: single particle / : Manne K, Acharya P

EMDB-22929:
Negative stain electron microscopy structure of RBD-directed Fab DH1044 in complex with 2P SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22930:
Negative stain electron microscopy reconstruction of cross-reactive RBD-directed Fab DH1045 complexed with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22933:
Negative stain electro microscopy reconstruction of cross-reactive RBD-directed Fab DH1047 in complex with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22936:
Negative stain electron microscopy reconstruction of NTD-directed neutralizing antibody Fab DH1048 in complex with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22942:
Negative stain electron microscopy reconstruction of NTD-directed neutralizing antibody Fab DH1049 in complex with 2P SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22944:
Negative stain electron microscopy reconstruction of NTD-directed Fab DH1050.1 in complex with hexapro SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22945:
Negative stain electron microscopy reconstruction of neutralizing NTD-directed Fab DH1050.2 in complex with 2P SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22946:
Negative stain electron microscopy reconstruction of neutralizing NTD-directed Fab DH1051 in complex with 2P SARS-CoV-2 spike ectodomain
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22947:
Negative stain electron microscopy reconstruction of non-neutralizing NTD-directed antibody Fab in complex with SARS-CoV-2 spike ectodomain in the 1-RBD-up state
Method: single particle / : Edwards RJ, Mansouri K

EMDB-22948:
Negative stain electron microscopy reconstruction of non-neutralizing NTD-directed antibody Fab DH1053 in complex with SARS-CoV-2 spike ectodomain in the 3-RBD-down state
Method: single particle / : Edwards RJ, Mansouri K

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